Bioinformatics Tutorials

Step-by-step guides to help you master bioinformatics tools

Molecular Dynamics Tutorials

Learn how to perform classical molecular dynamics simulations with the most popular engines.

GROMACS Tutorial

Step-by-step guide for biomolecular simulation and analysis with GROMACS.

AMBER Tutorial

Comprehensive tutorial for AMBER force field and MD workflows.

NAMD Tutorial

Efficient parallel MD simulation with NAMD for large biomolecular systems.

LAMMPS Tutorial

Learn LAMMPS for materials and molecular simulation.

OpenMM Tutorial

GPU-accelerated MD simulation with Python scripting.

CHARMM Tutorial

Flexible MD and free energy calculations with CHARMM.

DL_POLY Tutorial

General-purpose MD simulation for materials and biomolecules.

GROMOS Tutorial

Swiss-style MD simulation and analysis with GROMOS.

TINKER Tutorial

Molecular mechanics and dynamics with TINKER.

ACEMD Tutorial

High-speed GPU MD simulation with ACEMD.

Monte Carlo & Enhanced Sampling Tutorials

Explore advanced sampling techniques and Monte Carlo simulations for complex systems.

MCPRO Tutorial

Monte Carlo protein simulation and free energy calculations.

PLUMED Tutorial

Enhanced sampling and free energy methods with PLUMED.

Molecular Modeling & Visualization Tutorials

Master molecular modeling and visualization with leading tools.

VMD Tutorial

Visualize and analyze MD trajectories with VMD.

PyMOL Tutorial

Molecular graphics and structure analysis with PyMOL.

Chimera Tutorial

Interactive visualization and analysis with Chimera.

Quantum Chemistry Tutorials

Perform quantum chemical calculations and hybrid QM/MM simulations.

CP2K Tutorial

DFT, MD, and QM/MM calculations with CP2K.

Sequence Analysis Tutorials

Analyze biological sequences and perform similarity searches.

BLAST Tutorial

Complete guide to BLAST sequence analysis.