Bioinformatics Software Platform

Discover, learn, and use the best bioinformatics tools for your research

Software Directory

All available bioinformatics software and tools

GROMACS

High-performance molecular dynamics simulation package

AMBER

Biomolecular simulation software suite

NAMD

Parallel molecular dynamics simulation package

LAMMPS

Large-scale atomic/molecular massively parallel simulator

OpenMM

High-performance molecular dynamics library

CHARMM

Chemistry at HARvard Macromolecular Mechanics

Desmond

High-performance molecular dynamics simulator

ACEMD

GPU-accelerated molecular dynamics simulator

TINKER

Molecular modeling and simulation package

GROMOS

Molecular dynamics simulation package

DL_POLY

General-purpose molecular dynamics simulation package

MCPRO

Protein Monte Carlo simulation package

PLUMED

Enhanced sampling and free energy calculation library

CP2K

Quantum chemistry and molecular dynamics simulation package

YASARA

Molecular modeling and simulation package

VMD

Visual Molecular Dynamics visualization program

PyMOL

Molecular visualization system

Chimera

Interactive molecular visualization program

BLAST

Basic Local Alignment Search Tool

Tutorial Directory

Detailed software usage tutorials and guides